Hello,
I would like to ask for your opinion regarding a reference transcriptome for mm9. My task is to search for "novel" transcripts...
7 results in 0.0022 seconds.
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RefseqGene vs Ensembl for mm9
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Chromosome sizes don't match
Hi,
I'm having a heck of a time finding the chromosome sizes for mm9 that match the mm9 Bowtie pre-built indexes on their website. I... -
gmap_build error
Hi guys,
I am in process of configuring GSNAP on the cluster of my university however I am repeatedly encountering an error in one step and I cant...Last edited by Satya; 07-15-2014, 11:42 AM. -
Annotation of Mouse Rbpj gene
Hello everyone,
I'm analyzing an RNA-Seq experiment and I'm looking for some advice about how to interpret an anomaly that I'm seeing.... -
Where to get mouse training set (hapmap/omni) for GATK:VariantRecalibrator
I was calling SNP on mouse samples using GATK and was in the step of "Variant quality score recalibration". The VariantRecalibrator walker asked... -
Liftover on Mouse dbsnp
I find the latest version of dbsnp for mouse from the UCSC database is based on the mm9 reference. I'm trying to do a liftover of this file to the reference... -
tophat-fusion on mouse
Hi,
I see that tophat-fusion-post uses these files (included in the distribution):
ensGene.txt
ensGtp.txt
mcl
refGene_sorted.txt...
