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Rsamtools: how to output base positions on reads
When running samtools mpileup, the "-O --output-BP" option is used to get the base positions on the aligned reads. Is it possible to do the... -
Need to compare multiple mpileups for coverage overlap
I have 11 mpileups generated by novoalign from whole genome sequencing of Daphnia, which has a genome size of ~200MB. Each is the result of alignment...
