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aliner started a topic bwa mem does not find all alignments found by bowtie in multi-hit mode

in Bioinformatics

05-18-2015, 04:52 PM
bwa mem does not find all alignments found by bowtie in multi-hit mode

I generated a set of simulated reads from one microbial reference genome and would like to find all alignments of these reads against a large set of genomes....

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