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wbb1813 started a topic How to deal with normalized RNA seq data?

in RNA Sequencing

05-20-2014, 12:50 AM
How to deal with normalized RNA seq data?

Hi everyone !
I have got the TCGA data about prostatic cancer,the data has been normalized.Now I want to analysis it and find some different...

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atulkakrana started a topic Mapping sRNAs using Bowtie - Raw abundance vs norm abundance

in RNA Sequencing

06-02-2012, 11:40 AM
Mapping sRNAs using Bowtie - Raw abundance vs norm abundance

Hello All,

I have to map sRNAs to cDNA using Bowtie2. I have been told that abundance information is crucial for kind of analysis I am...

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jling started a topic Tophat: Is accepted_hits.sam normalized?

in Bioinformatics

11-03-2009, 03:36 PM
Tophat: Is accepted_hits.sam normalized?

Hi,

I was wondering how accepted_hits.sam was calculated. Is it normalized in any way?

The reason I ask is that I want to...

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