Dear all, I am trying to compare some QTL regions with specific genome regions that I have, for it I am using bedtools.
I used before bedtools with...
13 results in 0.0028 seconds.
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Targeted amplicon sequencing, is full overlap necessary?
Hi,
Has anyone got experience running targeted amplicon libraries at less than full overlap?
We have been asked to run... -
Trying to apply overlap to each row of a "GRangesList"
Dear Experts,
I have a "GRangesList" object like this:
GRangesList of length 1:
$TYPE1
GRanges with... -
Fastest way to find overlaps between multiple regions and a bed file
Dear experts,
I have a sorted large BED file (main.bed) and several regions defined in a file (regions.bed) which can be overlapping. I am...Last edited by francy; 09-20-2015, 05:18 PM. -
horizontal error bars overlap
Hi,
I'm using ggplot with geom_errorbarh() in R, so basically I want to plot horizontal error bars. How do I fix the overlap between them? I know... -
Significance of Overlapping Regions
I have two bed files of genomic coordinates. (say 12000 entries in one, 1000 in the other) I know how many unique bases in the genome are covered by each... -
feature coverage: + and - strands, overlaps
Hello,
I did feature coverage with SeqMonk,
and I have problems to know where my reads map:
I used a mRNA probe generator,
... -
Overlapping Paired End reads - questions...
Hi guys,
I've just received my first RNA-Seq data back from sequencing.
The company I used did chemical RNA fragmentation,... -
Looking to find number overlapping sequences between fastq files
Hi all, just starting to analyse NGS data, beginning to realise I should have been here asking for help from the beginning!
I have a number... -
cutadapt: guidance on rationale for --overlap=LENGTH values
Hi,
I'm getting up to speed with Marcel Martin's cutadapt for removing adapter sequences from Illumina libraries.
I'd appreciate... -
Determine paired end overlapping
I have a paired end Illumina exome data set that might have overlapped at the ends. My fragment size has 105 bp. I aligned my samples with bwa and generated...Last edited by chariko; 04-13-2011, 08:29 AM. -
Need some suggestion for overlap assembler
Recently, i faced with a problem, I want to overlap the sequences in order to have a longer one, but i can't find out a assembler which could be suitable... -
Overlap Graph
Dear All,
I have ~ 100000 DNA sequences in a fasta file. I am interested in finding the overlap graph of these sequences. I just want a...
