Has anyone ever looked at a GFF to find all the genes that have base overlaps ?
These genes can be counted a 0 in HTSeq and Arabidopsis is a dense...
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gene overlaps in Arabidopsis GFF file
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How to iterate GRanges objects in R for parallel processing more than one bed files?
Hi:
part of my job is to process bunch of bed files in parallel by using R. I have read each bed files as GRanges objects in R. I used GenomicRanges::findOverlaps(query,... -
reads mapping to overlapping genes?
Many reads are mapped to positions where overlapping genes reside. So we overestimated the number of reads mapping to some genes. How...
