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Sequence Alignment Algorithms, Biological Constants and Substitution Matrices
Over the past year, I've spent a great deal of time working on several packages related to bioinformatics. Of those packages, the two that I believe have...
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multifactor analysis or pairwise comparison?
I can't find a simple answer to what's the difference between doing multifactor analysis or pairwise comparisons, example:
I have two factors...
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Alignment of multiple sequences to one (fixed) reference
Hi all,
I have a reference sequence, which is shorter than the sequences I want to align. The first sequence is my reference, so it should be more...
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pairwise sequence alignment
This is a primitive question but somehow I could not find a solution to it. I have two sequences 'large' and 'small' as given below.
>large...
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Pairwise alignment of multiple sequences
Hello, I would like to perform a pairwise alignment between 100 samples that each contain about 2,000 sequences from different genomic regions. What I...
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Pairwise comparisons in DEXSeq
Dear all,
I am analyzing a RNA-seq experiment including more than 2 conditions. As discussed in this topic, I have created a global exonCountSet,...