Hi, I recently downloaded some solid short reads (35 bp), single end, and convert them in cfasta with ahi-dump.
I found that there are...
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mapping 35bp solid reads with tophat unsuccessful
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vcfutils.pl varFilter -D option setting
Hi,
Could somebody give me advices about the good practices to set the option "-D" of the vcfutils.pl varFilter script (from...
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Characterizing the problem of pseudogene reads in mapping and parameter tuning
We are interested in exploring the contribution of pseudogenes and reads from pseudogenes in the challenge of mapping reads and how different aligners...