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Tophat2 very slow when running over Bowtie2
We recently completed our first RNA-seq runs on an Illumina Hi-Seq 1000. These were paired-end 100bp reads, with ~30-50 million paired reads per sample....
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Comparison of mapping program performance for color-space reads?
Hi all,
I realize that many people here may have strong preferences as to which mapping program they use, but I'm trying to find out if there is...