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Convert mothur classify.seqs output to BIOM format
I got a lot of problems trying to convert output of mothur classify.seqs to BIOM format so that I can import data into phyloseq R package. I have FASTA...Last edited by Petr Kozyrev; 04-30-2017, 08:09 AM. -
Error in microbial count object: Error in hatmatrix/non-conformable arguments
I imported a phyloseq object to DESEQ2 for obtaining the log2fold change in the number of OTU's per sample. My condition is the disease_stat: cancer,... -
Filtering Specific OTUs in Phyloseq to BLAST sequences
I am currently working with the Phyloseq package in R to analyze 16s sequences. I sequenced the samples with Illumina's MiSeq platform.
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