Hi,
I downloaded bunch of bam files from TCGA projects and converted them to fastq files. Even though these BAM files are pair-end WES...
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picard SamToFastq error in umapped reads which MAPQ is not 0
Hi,
SamToFastq.jar will be stop when it meet the unmapped reads which flag is 4 or 20 but the MAPQ is not 0. Picard is not so smart,it couldnot...Last edited by upper; 12-05-2012, 05:33 PM.