Hi,
Can someone explain the following phenomenon. I ran bcftools (bcftools call -v -c )on a pileup created by samtools. This resulted in...
4 results in 0.0021 seconds.
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variant calling on a subsample of a BAM file..
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Pileup Question
Hi,
I am having several bam files and I need to do a pileup of each bam's such that all the pileups have the complete hg19 coordinates.... -
BMC Bioinformatics: PileLine toolbox to handle genome-position files in NGS studies.
Link to the article in BMC Bioinformatics:
http://www.biomedcentral.com/1471-2105/12/31
PileLine is publicly available at http://s...Last edited by gonvader; 02-11-2011, 04:44 AM. -
get read position from Samtools pileup
Hi all,
Has anyone come across a way to get information about the location of a snp within the reads? I have the usual bam/sam/pileup files....
