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How to get variant allele frequency for internal tandem duplications from Pindel?
I'm using the latest version of Pindel (0.2.5b9, 20160729) for somatic DNA to detect internal tandem duplications (ITDs) at variant allele frequencies... -
Problem with Pindel output
Hi,
I have been using normal/tumor GATK processed realigned and recalibrate bam files for mutation , indel and CNV analysis. I have used... -
Problem for pindel2vcf to create vcf from from pindel-created _D files
I am New pindel user, and use ../pindel -f hg19.fasta -i p1_config.txt -c ALL -o P2_Index_95_P319 to create P2_Index_95_P319 with _SI, _D, and so on....
