When using prinseq on paired end data and I want to trim the 5' end of both reads by 10 bases, how can I do it?
I've tried -trim_left 10...
5 results in 0.0021 seconds.
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Can prinseq do trim_left on paired-end?
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Prinseq-lite problem
Dear all,
I am using prinseq (v.0.20.4, CentOS) to filter my paried end data with the following commands.
[root@localhost]# perl prinseq-lite.pl...Last edited by kumar03; 12-09-2015, 06:40 PM. -
Is the PRINSEQ fastq-format weird?
Hi,
I have been using Prinseq to trim my Illumina data, and the fastq output looks like this:
...Code:@HWI-ST486:386:D1UMHACXX:3:1101:1399:2119
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Filter paired end based on GC content
Our genomic libraries (Arabidopsis) are contaminated with an endophytic bacteria and we would like to filter out this contaminant.
Is there... -
-A option in bwa
I've been trying to trim reads in prinseq then align them with bwa. I encountered a problem where bwa aln would get hungup on "align unmapped mate"....
