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bvk started a topic Question about using limma for differential analysis

in Bioinformatics

07-20-2017, 02:42 AM
Question about using limma for differential analysis

For the Differential analysis I'm using "limma" R package. I'm using RSEM log2 transformed counts data from XENA browser. A matrix "U"...

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Artur Jaroszewicz started a topic MACS2 fails to create *_treat_pvalue.bdg

in Bioinformatics

01-19-2016, 02:42 PM
MACS2 fails to create *_treat_pvalue.bdg

Hi all,

Thanks in advance for any help. I'm currently using MACS2 and trying to generate p-value tracks for some ChIP seq data as compared...

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leda started a topic pval adjustment

in RNA Sequencing

10-15-2013, 08:04 PM
pval adjustment

Why do the DESeq2/DEXSeq vignettes use p-value adjustment by the "BH" method, instead of the "BY" method? Shouldn't the latter be...

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ThePresident started a topic DESeq: pval vs padj

in Bioinformatics

09-04-2012, 06:00 AM
DESeq: pval vs padj

Hello everybody,

Statistics is not my strong side, so I'm asking a basic question here. I've done some bacterial RNA seq. I was able to...

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