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Cuffdiff q-values
I am having problem understanding the Cuffdiff q-values. I am using Cufdiff v.2.1.1 and I understand that in this version the lowest possible p-value... -
Are Cuffdiff q-values and p-values reliable when multiple treatments are analyzed?
Does anyone know if the q- and p-values output by CuffDiff are reliable when more than two treatments are compared in the the analysis.
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Q values in cuffdiff with 2 biological replicates
I'm using cuffdiff 2.1.1 to look for differential gene expression between two conditions. Each condition has 2 biological replicates. The results I get...Last edited by nr23; 08-22-2013, 10:30 AM. -
Cuffdiff producing q-values > 1
Hello at all,
I use TopHat and Cufflinks to process some human RNA-seq data with an annotation gft-file for known genes (this means my...
