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rlowe started a topic FASTQC: Quality Scores

in Bioinformatics

05-01-2012, 02:31 AM
FASTQC: Quality Scores

Hi,

I have some Illumina GAII paired end reads (bisulfite converted) taken from a previous study.

It seems that based on...

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kweber2 started a topic Getting map qualities with samtools mpileup?

in Bioinformatics

05-12-2011, 03:25 PM
Getting map qualities with samtools mpileup?

I've been using the -s option of samtools "pileup" to output the mapping qualities for each read at each position as a last column in the pileup...

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