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BWA -q soft clipping: Which alignment quality threshold to choose?
I wish to align to human genome samples sequenced in a Illumina HiSeq 4000. Most reads (single end) are between 20-40bp long, clean from adaptors. The...Last edited by Eurioste; 01-12-2018, 07:56 AM. -
Quality score at the single base level in a multiple alignment
Dear all,
In a 454 amplicon experiment, we've defined a particular population of reads. We would like to have a view of these reads with their...