I am trying to run GATK4 HaplotypeCaller on bam files from single individuals generated with bwa mem on Ubuntu 18 with
Code:
$gatk HaplotypeCaller
5 results in 0.0028 seconds.
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bwa GATK4 read group issues
Hello,
I am trying to run GATK4 HaplotypeCaller on bam files from single individuals generated with bwa mem on Ubuntu 18 with
... -
readgroup id, sample, library confusion
We recently sequenced a specific mouse strain. The sequencing data was generated on the 5500 XL platform from the same mate-pair library from a single... -
Error when using bwa sampe -r option
Hello,
I was trying to use -r option to assign read group information to the sam output of bwa, but it fails every time...Does anybody know...Last edited by yjx1217; 11-20-2011, 01:06 PM. -
Samtools 'import' and lost read group header
I am pretty new to manipulating NextGenSeq datasets, so my apologies if this question is trivial!
I want to format my .bam files so I can... -
Read Group
Hello,
Does anybody know the definition of read group?
I checked Sam format specification and there is no definition....
