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seqtechno1 started a topic demultiplexing multiple runs with and without samples same sample sheet

in Bioinformatics

12-07-2018, 06:34 AM
demultiplexing multiple runs with and without samples same sample sheet

Hello all,

I'm going to demultiplex a run with a sample sheet in which there are entries and adapter sequences in the sheet with no corresponding...

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bvk started a topic how to get the count of reads mapped to rRNA regions?

in RNA Sequencing

04-19-2016, 11:33 AM
how to get the count of reads mapped to rRNA regions?

Hi all,

I just mapped the RNA-Seqs by Tophat and got the output file accepted_hit.bam. I also have gtf file. I want to count the reads...

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bbl started a topic samtools sorting issue or HTSeq-count problem?

in Bioinformatics

10-28-2014, 03:22 AM
samtools sorting issue or HTSeq-count problem?

Hello all,

This has puzzled me for days and I couldnt find any explanation on the internet.
I noticed HTSeq-count gives the reads...

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