7 results in 0.0029 seconds.
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About the Recalibration of Best Practice Variant Detection with GATK v3
I tried to follow the protocol of"Better: sample level realignment with known indels and recalibration" in "Best Practice Variant Detection... -
How to do the recalibration of non-human species without good SNP database
Hi all,
I am dealing with the genome data of one bird, there are only a few studies about this bird (thus I do not have good SNP data... -
GATK Base Quality Recalibration
Hi all, I haven't seen anyone else mention this so I was wondering if someone could clear something up for me. The GATK base quality recalibration process... -
Missing dinucleotides after GATK CountCovariates
Hi all,
I have a weird problem in that I only see 4 dinucleotides in the GATK-CountCovariates result files for the dinucleotideCovariate... -
Samtools mpileup creates extra large file after local realignment
Hi All,
Typically when running mpileup, my variants.raw.vcf files run around 4-6G (whole exome resequencing). I recently began using local realignment... -
GATK CountCovariates running very slow
Hi,
I tried posting this question on GetStatisfaction GATK forum but kept getting an invalid request error in Firefox. I thought I would... -
Quality recalibration
I am working on using reads from regions that are not traditionally mapped(telomere), and am wondering about the GATK quality recalibration. As I understand...
