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Problem with blastdbcmd. “Error: [blastdbcmd] Skipped TRANSCRIPT/4865”
Hello, I am looking for help with running a Reciprocal BLAST. I cannot query any of my transcripts using blastdbcmd because I get this error message:...
Last edited by arredondoea; 03-06-2024, 12:43 PM. -
Retrieve genomic coordinates (locus start, locus end) from blastn hits?
Hi everyone, I'm trying to carry out some sort of reciprocal best hits analysis with blastn (so two-step process) in order to find orthologs (I know it... -
Reciprocal Blast & Parse and Collect best hits
Hi everyone,
I'm novice doing reciprocal blast and I have spent a lot of time trying it. I don't know how to do a reciprocal blast and... -
Reciprocal Blast & Parse and Collect best hits
Hi everyone,
I'm novice doing reciprocal blast and I have spent a lot of time trying it. I don't know how to do a reciprocal blast and... -
Clustering RBH hits into files by reference gene
I have performed RBH for each of five transcriptomes against a reference genome, producing five separate output files. I figured, for ease, it was best...Last edited by mfort001; 06-20-2016, 10:54 AM.
