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annotation of local sequence "uniqueness"
Hi all-- I am attempting to filter out false "SNPs" in my bowtie assemblies (yeast genomic DNA). One major predictor of SNP falseness is being... -
Redundant reads are removed from ChIP-seq, what about RNA-seq?
I have dealt with both ChIP-seq and RNA-seq analysis. In ChIP-seq, it's almost a standard procedure to remove those redundant reads that map to the same... -
How do I make next-gen SEQ data non-redundant?
I want to create a non-redundant fasta file of the data from next generation sequencing run. I would like the output fasta file to include the a count...Last edited by PRJ; 03-22-2010, 03:28 PM. -
unique reads for downstream analysis
I had a general query with short fixed length reads. Though I intend it for Solexa data only, it might be directly applicable to solid as well
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