I would like to map hundreds of fastq.gz single-end RADseq files to a single reference genome.
But, bwa mem is making a map file (.sam)...
4 results in 0.0069 seconds.
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mapping hundreds of RADseq fastqs to ref genome.
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post de novo assembly reference mapping?
I am curious if there is a program/app that would do post de novo assembly reference mapping--essentially breaking down the full scaffold into chunks... -
open source s/w to asssemble de novo assembly generated contigs using reference genom
Is there any open source assembly softwares that takes in de novo assembly generated contigs and reference genome to produce bigger contigs( reference... -
Compile multi-individual SNP tables from bowtie/samtools mappings
I am sure someone must have solved this before, and I wonder if there is not an obviously easy way to do this:
I have GAIIx-RAD data of...
