Hello,
how can I identify correct coding regions in a sequence--with the help of blast
4 results in 0.0021 seconds.
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samtools tview -d T problem
Samtools gurus,
I would like to generate multiple text files with alignment regions
like that shown in the attached tview.png, which... -
How to find covered regions from bam file
Platform: Hiseq 2000
Data: RNA-Seq
Alignment: TopHat
I want to get regions covered by reads from the tophat-aligned result (accepted_hits.bam)....Last edited by frewise; 03-11-2014, 12:56 AM. -
Not covered regions between bam and bed.
Hello,
My input files are:- input.bam (paired end) Illumina alignment obtained with BWA.
- regions.bed file which contains the intervals
Last edited by gmarco; 05-06-2013, 08:05 AM.
