5 results in 0.0039 seconds.
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samtools rmdup leaves unpaired mates
I have 100 bp paired end illumina hiseq reads, which I mapped with bwa-mem, and then used samtools to sort and rmdups. I am running into errors at the... -
rmdup can not move duplicates in forward and reverse strand for single-end reads
Hi, I have a sam file produced by BWA for single-end reads.
There is one type of results like the following:
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rmdup: FR orientation, ISIZE
Regarding rmdup, the manual page (version 0.1.10) for samtools at http://samtools.sourceforge.net/samtools.shtml states that:
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Segmentation fault with samtools rmdup
I am running into a Seg fault when using samtools rmdup.
I have paired-end alignments from bwa and filter them so that I retain only those... -
Samtools's rmdup vs. Picard's MarkDuplicates
I am trying to remove duplicate using samtools's rmdup and rmdupse, they don't seem to just remove everything that share the same start/end sites. I...
