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How to use AddOrReplaceReadGroups.jar with Tophat2 BAMs?
My travails started when I tried to produce mapping stats (exons, introns, intergenic regions) for RNA-Seq samples aligned with Tophat2 and Ensembl GTF... -
Error with RNA-SeQC
Hi,
I used following 4 steps to get sequencing statistics from RNASeqC but I get error, could anyone help me understand and get rid of... -
Run RNA-SeQC on tophat alignment result
Hey guys,
I want to use RNA-SeQC to analyse my tophat output.I know that the default output (accepted_hits.bam) of tophat could not be as...Last edited by vivienne_lovely; 04-26-2013, 06:53 AM.
