6 results in 0.0022 seconds.
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Rsamtools: how to output base positions on reads
When running samtools mpileup, the "-O --output-BP" option is used to get the base positions on the aligned reads. Is it possible to do the... -
R samtools::scanBam() pair mates during read in
Hello,
I'd like to read in paired end alignments from multiple samples and have them automatically paired by read id using the scanBam... -
SPP and Rsamtools Not Playing Nicely
Hello all,
I'm trying to analyze my ChIP-seq dataset using SPP but I keep getting the following error when I try to load my BAM files:... -
Rsamtools memory leak
Hi there,
I've just updated Rsamtools to the latest version ("1.22.0") and I've noticed a weird memory leak that is crashing... -
SNP simulation with SAM files
Hi all, I am trying to embed SNPs directly in a sam file for simulation purposes, i.e for a given set of genomic positions, to identify the reads the... -
mapping mismatches with Rsamtools, or best approach
Hi,
Given a bam file, I wish to identify the mismatches (state and position, ie. A->T at 21) between my mapped reads and my reference....
