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jasminegirl18 started a topic Can't use my SAM files for cuffdiff

in Bioinformatics

02-17-2014, 10:40 PM
Can't use my SAM files for cuffdiff

Hi everyone,

I am running a cuffdiff with GTF files from cuffmerge and SAM files from my mapped reads (CLC Bio). However, I've got error...

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illuminaGA started a topic Stranger character in the quality scores column of sam files

in Bioinformatics

11-25-2013, 07:39 AM
Stranger character in the quality scores column of sam files

Hello everyone.

I run bisulfite sequencing mapping with BSMAP. The output file was .sam format.
But the quality scores look very...

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