Hi all,
I have used SAMtools pileup in order to identify indels. According to this page, there should be 13 columns.
My...
4 results in 0.0021 seconds.
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SAMtools pileup output
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listing specific reads with SNP using samtools
Is it possible using the out of the box samtools to list what reads (read IDs) were used in determining a specific SNP call? Poking around it seems like... -
error message with samtools converting pileup to vcf
Hi,
I am new to sequencing. I use samtools 0.1.15 to run the pile up
samtools pileup -vcf hg19.fasta sample_removed_duplicates_sorted.bam... -
No output from Samtools pileup
I tried to call consensus using samtools pileup from the filtered BAM file which has only reads with no mate. But the result was empty. The following...
