Hello!
I am trying to understand what are the differences between samtools sort, picard reordersam and sortsam.
Thank you in advance...
7 results in 0.0030 seconds.
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samtools sorting issue or HTSeq-count problem?
Hello all,
This has puzzled me for days and I couldnt find any explanation on the internet.
I noticed HTSeq-count gives the reads... -
bam files not sorted by samtools sort
Hi,
Could I please be adviced on the following problem. I have sam files generated from bismark. I converted it to bam file using samtools... -
I am mad because of samtools sort command
I got .sam files from Bowtie2.
now I want to merge these two files.First ,I run:
samtools view -bSh ERR1.sam >ERR1.bam
samtools... -
Samtools sort vs Picard Sortsam
Hi all,
Which is a better pick for sorting large SAM files in terms of memory requirement and run time: sortSam from Picard or Samtools... -
sorting bam files
Hi,
I have run a bowtie followed by a tophat with the unmapped reads.
I than want to merge the two sam files (output).... -
samtools sort stdout
Hello
I am mapping reads from bacterial sequences to reference genomes and I am using bwa and samtools. I am trying to set up a pipeline...
