Hello!
I am using samtools view to map short reads (-phred33) against a reference genome.
The problem is that I don't know how to properly...
4 results in 0.0029 seconds.
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mapping quality scores in samtools view?
Last edited by ampsevilla; 05-18-2023, 03:23 AM. -
No bam from kallisto or Salmon after piping into samtools
Hi all,
I am trying to generate the pseudo bam files from both Kallisto v45 and Salmon v13 and can't get either to pipe into Samtools and... -
samtools view segmentation fault
Hi all,
I am trying to convert a sorted .bam file back into a .sam file for downstream programs
but when I run the command: ... -
Possible samtools view bug
I'm using samtools to extract some regions from a BAM file, and in some situations, I don't get back all of the reads that overlap the region.
...
