Hello everyone,
I sequenced some rice genome using HiSeq 2000 with ~100X coverage. I used BWA to do the alignment and want to use Samtools to do...
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How to determine maximum read depth in Samtools VarFilter
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Samtools SNP Caller versus MAQ SNP caller
I have been using MAQ's variant caller to call SNPs. I now want to use Samtools.pl varfilter and want to make sure that I maintain the same conditions...
