Hi all,
I am running picard MarkDuplicates with REMOVE_DUPLICATES=TRUE.
From what I have read, if picard marks a primary alignment...
2 results in 0.0021 seconds.
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Picard MarkDuplicates and Secondary Reads
Last edited by Ham.m; 03-28-2017, 05:56 AM. -
Secondary Alignments with BWA-MEM
When I have split reads originating from repetitive sequences I must use the -a flag to get the secondary alignments. The problem with this is that with...
