Dear All, i am working on a project that will do De novo RNA-Seq Assembly using Trinity. Totally have 16 samples from 2 projects.
1. 8...
8 results in 0.0021 seconds.
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De novo RNA-Seq Assembly using Trinity with variable length reads
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Finding mismatches between two sequences using R
Hi,
I am new to R programming. I have two fasta files namely WT and MT that contains 3 protein sequences which is given below
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.gmp file explanation when looking for A --> I editing events in GNUMAP
HI,
I am using GNUMAP software to look for A-->I RNA editing events.
I am using -d OPTION IN gnumap SOFTWARE which looks for... -
Paired end RNA-seq orientation
Can someone explain to me what the orientation in paired-end RNA-seq data means? Is forward/forward the standard orientation? How does this affect tophat... -
statistical justification of partitioning dataset for multiple analysis (EdgeR)
Dear all,
I'm doing analysis on allready mapped reads from sequencing data for differential expression with EdgeR. My experimental setup... -
INDELS/JUNCTION Detection Paired End DNA SEQ
Hi everyone,
I am using paired end 100 bp reads on an illumina hiseq platform to find chromosomal rearrangements. I can find them just fine...Last edited by SequencingWhore69; 03-25-2013, 12:35 AM. -
Bowtie2 Bug: error reporting multiple alignments
Hi,
I think I've found a problem with reporting multiple alignments in Bowtie2, and was wondering if anyone else can confirm.
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marcowanger started a topic [Important] Calls for suggestion for potential reviewers for SEQanswers publicaitonin General[Important] Calls for suggestion for potential reviewers for SEQanswers publicaiton
Dear all,
We are about to send out our manuscript of "SEQanswers wiki" to NAR database issue 2012.
...Last edited by marcowanger; 08-14-2011, 11:06 AM.
