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Sequence Alignment Algorithms, Biological Constants and Substitution Matrices
Over the past year, I've spent a great deal of time working on several packages related to bioinformatics. Of those packages, the two that I believe have... -
What is the file .mums created by mummer ?
Hello !
I am doing genome sequence alignment using MUMmer, in particular I want to do a dotplot with mummerplot. So the passages that I... -
Discovering the world of the Long-read nanopore Sequencing
Nanopore sequencing technology is an emerging and a promising sequencing technology, which promises high sequencing throughput, low cost and longer read... -
How to specify/calculate subject coverage in tBLASTn
I have been screening the homologous gene sequences from my genome of interest by doing tBLASTn, wherein I have to specify two mandatory parameters such... -
The phylip doesn't work
I have been dealing with it for 4 hours. It still doesnt work and I will go crazy
It said that unexpected end-of-file. I want to use [B]... -
No coverage or very low coverage in the Complete Genomics data
Hi,
Has anyone worked on Complete Genomics data? Most of the exons in the data have no coverage or very low coverage (5-10 reads only)... -
Extension of reads
Hi,
I just want to extend the read by 20bp to the 3' or 5' end of the read, with high quality score, based on the reference genome sequence. Kindly... -
Perl Task
Hey everybody, I'm new here. Currently I've been teaching myself (biology student) how to use part, in particular for sequence alignments. Now I'm trying... -
newbie! help needed
Diagnosing autosomic recessive diseases. -
Postdoctoral research fellow position in Bioinformatics at University of Helsinki
Postdoctoral research fellow position at the forefront of digital health revolution at the Institute of Biotechnology, University of Helsinki, Finlan... -
Live Webinar - Discover What Your Sequence Holds
Discover what your sequence holds with Genome Compiler intuitive & free software platform. Learn how to:
• Detect Open Reading Frames ... -
Best tool to view sequence alignment?
I blasted my de novo assembled RNA-Seq transcriptome for a particular protein using tblastn, and found three transcripts similar to this protein. The... -
Comparative Genomics - BLAT
Hello,
I have assembled two related species using Abyss. However, I would like to know if there is a significant difference between the... -
Bam.iobio: An Interactive, Real-Time, Sequence Alignment Inspector App
I'm pleased to introduce Bam.iobio, the first app of its kind that allows scientists to inspects BAM sequence alignment files on their web browser, interactively,... -
Help with Bowtie2
Hi all!
I am currently working on a project where I am trying to align assembled scaffolds from the Human Microbiome Project to a gene...
