Hi all,
I want to perform an alignment of short reads against a reference genome (human genome from Ensembl). For that I've used STAR,...
9 results in 0.0028 seconds.
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Mapping using STAR and Bowtie
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Bowtie2: a specific use where the parameters are not respected
Hello everyone,
I'm writing this post because I observed a strange behavior with bowtie2. And I suspect this behavior to affect mostly alignments... -
mapping 35bp solid reads with tophat unsuccessful
Hi, I recently downloaded some solid short reads (35 bp), single end, and convert them in cfasta with ahi-dump.
I found that there are... -
BBMap (aligner for DNA/RNAseq) is now open-source and available for download.
BBMap is now available here:
https://sourceforge.net/projects/bbmap/
Links to other BBTools forum threads:
BBSplit (Binning...Last edited by Brian Bushnell; 12-04-2016, 12:09 AM. -
Introducing BBMap, a new short-read aligner for DNA and RNA
BBMap will be publicly released soon, pending confirmation with LBL's legal department.
In the meantime feel free to look at these graphs...Last edited by Brian Bushnell; 11-10-2014, 12:09 PM. -
Challenging read mapping problem
Hi,
I have about 70Gbp of paired-end data from potato [1] that I'd like to map to one of the chromosomes (chr04). I only want pairs where...Last edited by dan; 09-18-2012, 09:09 AM. Reason: Either end or both ends can match, and I want to return the pair. -
Not report promiscuous reads in bowtie
Hi,
I was wondering if there is a way in bowtie to stop further alignment of short reads that have already mapped to more than a certain number... -
