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craigt started a topic bcftools is slow

in Bioinformatics

05-16-2018, 08:41 PM
bcftools is slow

Hi,

I am subsetting a vcf by positions stored in a tab delimited file using bcftools. I noticed the program is very slow. Here is the command:...

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chris started a topic How long to wait for Tophat2 to finish?

in Bioinformatics

05-21-2012, 01:38 AM
How long to wait for Tophat2 to finish?

Hi all,

I'm trying to run tophat2 on a three paired-end datasets against hg19, but it has taken three days so far! How long do typical...

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jnfass started a topic gsAssembler / newbler hangs during (large?) assembly

in 454 Pyrosequencing

12-22-2008, 10:13 AM
gsAssembler / newbler hangs during (large?) assembly

I'm wondering if anyone else has seen this behavior:

I've started an assembly run several times, and each time it gets to about this p...

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