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alignment view and vcf disagree
I have a pacbio CCS fastq file that I have aligned to a small (5037 bp) reference which is part of a sequenced BAC clone. I have aligned this data with... -
Read mapped in proper pair (0x2) flag in SMALT aligner
Hi,
I used SMALT to align MiSeq PE reads to a single-strand, unsegmented viral reference genome. When I looked into the results, I found...Last edited by PBMS; 12-31-2018, 05:51 AM. -
Mapping Illumina data with smalt
I have paired end Illumina data and currently I am using different algorithms to map and call SNPs in order to make high confidence variant calls. ... -
ssaha2/ssahaET/smalt options for 454 titanium reads?
Hi 2 all,
I'm trying to map transcriptomic reads obtained with 454 GS FLX Titanium tecnology to a reference genome (very, usual, no big deal)...Last edited by eni; 04-07-2010, 10:15 AM.
