5 results in 0.0025 seconds.
-
GATK HP is missing high coverage variant sites
I am trying to use GATK HP ( v3.5 ) to call SNPs in amplicon seq data of a small genome of around 600bp. As shown in the attachment, the variants are... -
Output not right from mpileup command?
I am new to bioinformatics and I just starting working on two datasets in an attempt to identify allele-specific expression. I currently am working on... -
GATK UnifiedGenotyper with reducebam error
I am using GATK UnifiedGenotyper on multiple bam files for target enrichment sequencing. I get an error which although is a "user error", I... -
average variant location of reads
Hi,
I have a human sequencing data, and reads have been mapped with bwa. Any suggestions on what is the best way to extract following statistics?... -
SNP Caller for BAM Files
Have people used other tools apart from Samtools' SNP caller for calling SNPs? If yes, how does it compare?
Cheers,
AnamikaD
