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Getting insertion counts from DNA sequence data
For matched tumor and normal pairs, we easily get insertion and deletion counts from the output of Somatic Indel Detector in GATK. However, when we run...
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Error during GATK SomaticIndelDetector
Hi,
I'm currently working in a pipeline to assess somatic mutations (SNPs/indels) so I am checking the SomaticIndelDetector tool from GenomeAnalysisTK-1.1-25....