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bowtie2-build , How to use more CPU cores
When running "bowtie2-build" to build the index files it uses only one core. Is there any way to add option in order to use all 4 cores? Very...
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crossmatch speed?
Hey folks,
Does anyone know if there are parameters that you can set when running cross_match within consed to speed things up? Its taking...
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Installing a command/program to a remote computer
I downloaded fastq-dump. While it does the job on my personal computer, it runs very slow.
I have access to a remote computer that can...
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Speed of variant callers
My variant calling seems very slow. What do you think?
We have 10 BAM files, each about 2.5GB, covering a targetted region of about...
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Help! about GATK realignment speed
Hi All,
I try to do SNP calling using GATK. This is my first time to do such things and I generated the work flow as follows. Everything went well...
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Novoalign speed tips for 25bp reads
I'd like to use novoalign for alignments since I've found it to be very accurate, but it is very slow at short read lengths.
Heng li stated...
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CLC Genomics Workbench - Windows vs. Linux
Hello everyone. I'm a bioinformatics student from Holland and my internship supervisor just told me he's thinking about ordering a license for CLC Genomics...