Hi,
I have been following the github tutorial, https://github.com/griffithlab/rnaseq_tutorial/wiki
to learn RNAseq.
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6 results in 0.0028 seconds.
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Indexing- Exons and splice sites
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Missing noncanonical splice sites in TopHat align.
We are searching for noncanonical splice sites.
We have produced RNA-seq of a set of 60 human samples and produced aligs against human... -
ViReMa: an algorithm for finding viral recombination or fusion events in NGS data
Hi all,
I have written and made available an algorithm I wrote in Python called ViReMa: a Viral Recombination Mapper.
The... -
another beginner
Hello
My name is Joseph, I am new to here, and also new to bioinformatics.
I am working on splice site prediction and I tested my method... -
Changing Tophat 5' and 3' splice-signal criteria
Hi,
I need to change Tophat's splice signals criteria for junction calling (i.e. add more signals to those that tophat considers: ["GT-AG",... -
Splice site prediction with solid rna-seq data
Hi all
We are having problems predicting splice sites from our Solid rna-seq data. We have a draft genome (125Mb, a eukaryote) assembled...
