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Finding isoform sequences for Differentially spliced genes
I've performed RNA-Seq analysis for A. thaliana using the TopHat/Cufflinks pipeline for 2 conditions. How can I extract the sequences of all isoforms... -
Cuffdiff splicing.diff output
Dear all,
I run cufflinks/cuffmege/cuffdiff pipeline on my data. But I have some problem on how to interpret the splicing.diff results.... -
differential isoform usage test
Say I have one gene of interest. Based on Ensemble annotation, this gene has 10 isoforms. I want to use cufflinks to estimate the expression of these...
