Webinar on Detection of Structural Variants in Targeted Sequencing on 30 Sept 2015
Speaker: Dr. Shanmukh Katragadda, Vice President - Software...
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Live Webinar on Detection of Structural Variants in Targeted Sequencing
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splitting longer reads into two smaller reads for bowtie input
Hi all,
I have sequence data from Illumina GA with read length of 95 bp's (after trimming).
Now I am using a tool which works with... -
coverageBed -split giving incorrect output?
In the command below, coverageBed seems to be ignoring the -split argument.
$ coverageBed -split -a a2.bed -b b2.bed > out.txt
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split read SV identification
Could anyone suggest a good tool to identify indels/SVs based on split-reads (like the ones generated by bwa-sw). -
count reads across exon junctions
Suppose I have a bam file of paired-end reads and a gff file for exon locations. Is there an easy way to count the number of split reads (which can be...
