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jazz710 · 03-04-2016, 09:40 AM

Hello all,

I'm trying to analyze my ChIP-seq dataset using SPP but I keep getting the following error when I try to load my BAM files:...

kesner · 04-09-2014, 10:38 AM

I've been looking at the tutorials for spp and cannot figure out if the function find.binding.positions scales to data size during its algorithm.
...

mthornton · 05-29-2013, 03:09 PM

Hello!

I am processing some data that I can't really redo. I only have the IgG isotype control for these samples. They are also pretty...

potatoo · 08-20-2012, 05:39 PM

Hi guys,
I've tried install spp (http://compbio.med.harvard.edu/Supplements/ChIP-seq/) to my macbook pro or my ubuntu, met the same error. Stcuking...

ewilbanks · 11-11-2010, 03:27 PM

Hi all,

I've been using Kharchenko et al's spp R package for calling peaks in ChIP-seq data for sometime. I've been really happy with...

SPP and Rsamtools Not Playing Nicely