Hello everyone!
I'm new analyzing transcriptomic.
I have small RNA-seq data, single-end from Rat.
Initially, I mapped the data with...
9 results in 0.0032 seconds.
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Questions about small RNA-seq (single-end and strand-specific)
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Count reads mapping to non-feature area
I have a bam file containing arabidopsis short RNA reads that I have mapped to the TAIR10 genome. Is there an easy way to get counts of reads that overlap... -
abnormal length distribution of small RNA data
Hi everyone,
I have six libraries of small RNA sequences from illumina platform, among them 5 show normal length distribution (24nt sRNAs...Last edited by leejimmy93; 08-19-2014, 06:58 PM. -
Trimmomatic dropping 100% sRNA reads
Hi All,
This is my first post on SEQanswers and I am hoping some help from senior members . I am analyzing sRNA single end sequencing data... -
Align sRNA reads from two libraries
Hi All,
I need to check if there are some common reads between two sRNA libraries. In fact what I trying to do is find specified set miRNAs... -
SeqTrimMap mapping issue
I have Illumina smallRNA-RNAseq reads that have already had their adapters removed and have been filtered for tRNA/rRNA.
I'm trying to... -
Mapping sRNAs using Bowtie - Raw abundance vs norm abundance
Hello All,
I have to map sRNAs to cDNA using Bowtie2. I have been told that abundance information is crucial for kind of analysis I am... -
rna-seq experiment not strand-specific or coverage symmetry
hi all,
i'm trying to validate a new method for the identification of sRNA in bacteria based on the analysis of RNA-seq output that seems to work... -
miRNA identification in plants using smallRNA deep SEQ data
I am trying to identify miRNAs (novel and conserved) in a plant species using small RNA deep sequencing and a draft genome (~8x coverage). The only problem...
