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Set ssaha2 parameter for mismatch
I want to align 454 reads against a transcriptome reference using sssaha2. Tolerance are set to five mismatchs for each alignment. Which parameter can... -
ssaha2/ssahaET/smalt options for 454 titanium reads?
Hi 2 all,
I'm trying to map transcriptomic reads obtained with 454 GS FLX Titanium tecnology to a reference genome (very, usual, no big deal)...Last edited by eni; 04-07-2010, 10:15 AM. -
"beginner in alignment" question
Hello,
I am analyzing Roche 454 sequence data. The sequencing was performed not for whole genome but for the exons of (around) 100 genes. When... -
mapping 454 reads to a reference genome
What is the best tool available to map 454 reads to a reference genome? What is the method used by gs reference Mapper (analysis tool that comes with...
