Hello all,
I have been trying to use SSPACE for scaffolding contigs in a de novo assembly, but can't seem to get the library file right....
9 results in 0.0028 seconds.
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SSPACE library file
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Problem with SSPACE, multi-threading and memory restrictions
Hi,
I am attempting to use SSPACE version 3 to re-scaffold some mRNA contigs using paired-end RNA-Seq data. While SSPACe was designed for rescaffolding... -
re-scaffolding using BAC end read pairs
Hello,
I have a vertebrate genome assembly with contigs and scaffolds generated from ~80X PE Illumina small-insert and mate-pair libraries.... -
Problem extending/scaffolding contigs with MiSeq 250bp reads?
Greetings. I have some denovo assembled contigs (Velvet 1.2.10) made from 250bp MiSeq (Illumina) reads. After I make the contigs, I normally extend... -
SSPACE creates tandem duplications instead of merging
Hi all,
I'm using SSPACE v2.0 on a set of contigs assembled through Velvet, with parameters
-x = 0
-z =... -
Scaffolding despite multiple links in SSPACE
I have denovo assembled a 1.8 Mbp genome with a PE 100 bp 360 insert library using abyss resulting in 69 contigs. After that I scaffolded these contigs... -
Scaffolding a highly repetitive genome
Hi all,
I'm working through a difficult region in a highly repetitive plant genome. I've got 30 BACs sequenced and assembled into contigs...Last edited by aharkess; 12-08-2012, 11:01 AM. -
Sspace scaffolder : does it take the "insert size" or the "fragment size"
Hi all,
I am trying to use SSpace for scaffolding my already assembled contigs:
I wanted to know if the insert size column... -
SOAPdenovo for ABySS contigs
Dear All
I am using ABySS to generate contigs from human reads. I now want to make scaffolds from it. I used SSPACE but did not get as...
