This is a two part question;
(a) To identifying protein change by SV identifiers for genes
I have some structural variants...
17 results in 0.0023 seconds.
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Trying to Identifying protein impact by SV amino acid change
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SMRT Informatics Developers Conference - Registration Now Open
Join us in San Diego on January 16, 2019, for this collaborative half-day informatics conference focused on de novo genome assembly, genome annotation... -
translocation detection question
Hi all,
I am wondering...
how is it possible for tools like breakdancer and lumpy to detect translocations in a sample without... -
Live webinar on DNA-Seq Data Analysis - Selected Case Studies on 22 Feb 2017
Webinar on DNA-Seq data analysis- Case Studies
DNA-Seq data can be analyzed and visualized using an extensive workflow in Strand NGS software.... -
Looking for structural variants with paired-end sequencing data
Hello community,
I am dealing with 150bp, paired-end, Illumina sequencing data from a relatively small bacterial genome (around 2MB). I... -
Live Webinar on Detection of Structural Variants in Targeted Sequencing
Webinar on Detection of Structural Variants in Targeted Sequencing on 30 Sept 2015
Speaker: Dr. Shanmukh Katragadda, Vice President - Software... -
Pindel optimisation for exome data
Dear All,
I am trying to optimise Pindel to run on a small set of 12 whole exome samples to detect structural variants. With the latest... -
A new open source tool for structural variant discovery: RAPTR-SV
Hello everyone,
We are pleased to present a new tool for Structural Variant (SV) discovery using whole-genome, paired-end sequence data:... -
Breakpointer, Predicting Structural Variation from SE Illumina Reads + Reference
Hello all,
I am having some difficulty predicting were the breakpoints of a known large-scale inversion (~4-10 Mb, inferred by population... -
Breakdancer inaccurate output.
Hi Guys,
I have run Breakdancer on a mouse KO sample and got several lines containing intrachromosomal translocations but described as interchromosomal,... -
Breakdancer output file question
Hi all,
I am using breakdancer to identify SVs on some whole genome samples. This is the first time that I am using the program and am... -
Structural Variants simulator
In order to test SV detection tool I want to create SV simulation pipeline.
SNP/Indel´s can be generated using wgsim and I am looking...Last edited by Povillasgi; 02-05-2013, 06:19 AM. -
Filtering Breakdancer results
Hello,
I am trying to use breakdancer for the first time, and I am wondering about rational strategies for trying to filter down to the most likely... -
breakdancer several bam misunderstand
Hello,
I am calling breakdancer to see which structural variants are different from one sample to another. For these I do this two steps:... -
Can you tell recombination/conversion from SAM flags?
Hi all,
I have tried for some time now to figure out if I can detect recombination or gene conversion using discordantly mapping reads...
